FastQCFastQC Report
Sat 3 Sep 2022
EGAF00002488206

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002488206
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441513
Sequences flagged as poor quality0
Sequence length35-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN41650.9433470815128886No Hit
ATCCTAAACTTACCAAATATTTGCCCTTAGATAAAGGCATCAAACCTTAC9350.21177179380901584No Hit
GTATGTAAATAATGCCTGGTTTGGAAGTAATGATTAACTATATGTTCAGG9150.20724191586657695No Hit
CTCTTACAGTTAACGAAAAAAGGAGATTAAAATTGATCATGCCTGCTAGG7830.1773447214464806No Hit
GGAACATATTGTACAAAAAATCAAACAATGTTTTCGGAAACTTCCTGTAA7160.1621696303393105No Hit
CTCCAAAAGACACCAAATACTCAAGAACAGTTTCTCTTCCAAAAGTAAGA7000.15854572798535943No Hit
GTTTAGGATAGAACCTAGCAGGCATGATCAATTTTAATCTCCTTTTTTCG6890.15605429511701807No Hit
GTCTTTGAAGTATGCCTCAAGGTCGGTCGTTGACATCGCTGAGAGTCCAA6620.14993895989472564No Hit
ATCCCAAACTTACCAAATATTTGCCCTTAGATAAAGGCATCAAACCTTAC6560.14857999651199397No Hit
CCCTTTACACAATGTGGTTACCCAGCATTAATGCCTTTGTATGCATGTAT6310.14291764908394541No Hit
GTTCAGGATAGTAAGGTTTGATGCCTTTATCTAAGGGCAAATATTTGGTA5160.1168708509149221No Hit
CTATAAGGGGGAGGAGTGCGAATCCACACTCCAAAAGACACCAAATACTC5140.1164178631206782No Hit
GTAGTAAGCTATGTCAATGTTAATATGGGCCTAAAAATCAGACAACTATT5080.11505889973794656No Hit
GTGCTGGTGAACAGACCAATTTATGCCTACAGCCTCCTAGTACAAAGATC4900.11098200958975162No Hit
GTGTAAAGGGAGCGGCAAAACCCAAAAGACCTACAATTCTTTGACATACT4720.10690511944155665No Hit
GTATACATGCATACAAAGGCATTAATGCTGGGTAACCACATTGTGTAAAG4620.10464018047033723No Hit
ATATAAAATACCAGCCTTCCACAGAGTATGTAAATAATGCCTGGTTTGGA4540.1028282292933617No Hit
GGATATTATCAATAGATGTGAACAATATGTGGGCCCTCTTACAGTTAACG4510.10214874760199587No Hit
ATGTTAATATGGGCCTAAAAATCAGACAACTATTGTGGTTTCACATTTCC4430.10033679642502033No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)