FastQCFastQC Report
Sat 3 Sep 2022
EGAF00002488207

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002488207
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441513
Sequences flagged as poor quality0
Sequence length35-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN41390.9374582401877182No Hit
GTATGTAAATAATGCCTGGTTTGGAAGTAATGATTAACTATATGTTCAGG10820.2450663966859413No Hit
GTTTAGGATAGAACCTAGCAGGCATGATCAATTTTAATCTCCTTTTTTCG8080.18300706887452917No Hit
ATCCTAAACTTACCAAATATTTGCCCTTAGATAAAGGCATCAAACCTTAC7520.17032341063570042No Hit
CTCTTACAGTTAACGAAAAAAGGAGATTAAAATTGATCATGCCTGCTAGG7380.16715249607599322No Hit
GGAACATATTGTACAAAAAATCAAACAATGTTTTCGGAAACTTCCTGTAA6830.15469533173428643No Hit
CTCCAAAAGACACCAAATACTCAAGAACAGTTTCTCTTCCAAAAGTAAGA6720.15220389886594507No Hit
GTCTTTGAAGTATGCCTCAAGGTCGGTCGTTGACATCGCTGAGAGTCCAA6190.14019972231848213No Hit
CCCTTTACACAATGTGGTTACCCAGCATTAATGCCTTTGTATGCATGTAT6120.13861426503862853No Hit
ATCCCAAACTTACCAAATATTTGCCCTTAGATAAAGGCATCAAACCTTAC6070.13748179555301882No Hit
GTTCAGGATAGTAAGGTTTGATGCCTTTATCTAAGGGCAAATATTTGGTA5930.13431088099331165No Hit
CTATAAGGGGGAGGAGTGCGAATCCACACTCCAAAAGACACCAAATACTC5720.12955450915375083No Hit
GTGTAAAGGGAGCGGCAAAACCCAAAAGACCTACAATTCTTTGACATACT5530.12525112510843395No Hit
ATATAAAATACCAGCCTTCCACAGAGTATGTAAATAATGCCTGGTTTGGA4970.1125674668696052No Hit
GTTTACAGGAAGTTTCCGAAAACATTGTTTGATTTTTTGTACAATATGTT4860.11007603400126384No Hit
GTAGTAAGCTATGTCAATGTTAATATGGGCCTAAAAATCAGACAACTATT4850.1098495401041419No Hit
GTTTGGGATAGAACCTAGCAGGCATGATCAATTTTAATCTCCTTTTTTCG4710.1066786255444347No Hit
ATGTTAATATGGGCCTAAAAATCAGACAACTATTGTGGTTTCACATTTCC4500.10192225370487393No Hit
GTATACATGCATACAAAGGCATTAATGCTGGGTAACCACATTGTGTAAAG4440.10056329032214228No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)