FastQCFastQC Report
Fri 2 Sep 2022
EGAF00002488734

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002488734
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences294701
Sequences flagged as poor quality0
Sequence length35-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCTGGTGTCTACGGAGCAGTGATTTTTTGGAGAACACAGATAACATTA4680.15880502611121103No Hit
GTGCTGGTGCGTGAGGAGATGGACACAGACGGGAGCGGCAGGAGAAAAGA4040.13708809946352404No Hit
TCCCCACACCACGCATTTCTCTTTTAAAGACTTGTGGGATTGAAAACCTG3710.12589030916081045No Hit
GTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGGTCACCCGTG3640.12351502030871968No Hit
ACCTCCTGTCATCCAATTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCG3570.12113973145662892No Hit
GTCCCGTACTGGTTGTTGTTGATCCTGGAAGTAGAGGACAAACGGGCAAC3510.11910376958340826No Hit
AGTCTAGACTCTGCGGTATTGTGAGGATTTTTGTCAACAAGAAAAACCCC3490.11842511562566804No Hit
ACAGAAGGTTGGTGAGTGATTGGAGGTTGGGGACTGCGAATTTTGGCCAA3460.11740713468905772No Hit
CCTACTCTCCTCCCCCAGCTCCTCCCAGTCCTTAAACACACAGTCTTTGA3310.1123172300060061No Hit
GCCCTGAACCGTGCCCAAGGCTGTGTGCTCATCTCTGCCAGGATGTCTGT3140.10654867136521425No Hit
GTGTGGGGATAAGATGACAGGCCTTGGAGACCCATGGAGTCCTGGCTTTA3050.10349472855538326No Hit
CCTCCAGCCTATAGACCACCAAATGCCCCTATCTTATCAACACTTCCGGA2990.10145876668216261No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)