FastQCFastQC Report
Sat 3 Sep 2022
EGAF00002489218

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002489218
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences350794
Sequences flagged as poor quality0
Sequence length35-151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATGTAAATAATGCCTAGTTTTGAAGTAATGATTAACTGTATGTTCAGG18940.5399180145612524No Hit
CTTATATAGAATGCCAGCCTTCCACAGAGTATGTAAATAATGCCTAGTTT15450.4404294258168612No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN11550.3292530659019253No Hit
TTATTAATAGATGTCAACAATATGTGGGCCCTCTTACAGTTAATGAAAAA11320.3226965113428394No Hit
ATCCTAACCTTACCAAATATTTGCCCTTGGATAAAGGCATTAAACCTTAT10930.3115788753513458No Hit
CTCTTATATAGAATGCCAGCCTTCCACAGAGTATGTAAATAATGCCTAGT9640.2748051563025593No Hit
GAGTATGTAAATAATGCCTAGTTTTGAAGTAATGATTAACTGTATGTTCA7480.21323055696505644No Hit
GGATAATAAGGTTTAATGCCTTTATCCAAGGGCAAATATTTGGTAAGGTT6970.19869210989925712No Hit
GATTAAAATTAATTATGCCTGCTAGGTTCTATCCTAACCTTACCAAATAT6160.17560163514769353No Hit
TCCACAGAGTATGTAAATAATGCCTAGTTTTGAAGTAATGATTAACTGTA6120.1744613647895916No Hit
GTTCTATCCTAACCTTACCAAATATTTGCCCTTGGATAAAGGCATTAAAC5920.16876001299908208No Hit
GTGTAAAAGGGGCAGCAAAGCCCAAAAGACCCACAATTCTTTGACATACT5580.15906771495521588No Hit
GTTTTGAAGTAATGATTAACTGTATGTTCAGGATAATAAGGTTTAATGCC5540.15792744459711397No Hit
GTATACATGCATATAAAGGCATCAAGGCAGGATAGCCACATTGTGTAAAA5530.15764237700758849No Hit
CTCCAAAAGACACCAAATACTCAAGAACAGTTTCTCTTCCAAAAGTAAGA5320.1516559576275535No Hit
ATTTCAATCTCCTTTTTTCATTAACTGTAAGAGGGCCCACATATTGTTGA5150.1468098086056204No Hit
CTTTAATCCTGAGTGGCAAACTCCCTCTTTTCCTAACATTCATTTACAAG5000.14253379476273825No Hit
GGGTAAAGGTTCAGATATTGTTTACACAGAAAAGCCTTGTAAGTTGGCGA4920.14025325404653444No Hit
GATTAACTGTATGTTCAGGATAATAAGGTTTAATGCCTTTATCCAAGGGC4730.13483696984555038No Hit
CTCTTACAGTTAATGAAAAAAGGAGATTGAAATTGATTATGCCTGCTAGG4420.1259998745702606No Hit
GATTAAAATTGATTATGCCTGCTAGGTTCTATCCTAACCTTACCAAATAT4400.12542973939120966No Hit
CCCTTAATTTCATGGGATATGTAATTGGAAGTTGGGGTACTTTACCACAA3980.11345690063113965No Hit
GCTTTATTCTTCTACTGTACCTGTCTTTAATCCTGAGTGGCAAACTCCCT3950.11260169786256322No Hit
CTCATAAGGTGGGAAACTTTACTGGGCTTTATTCTTCTACTGTACCTGTC3870.11032115714635941No Hit
CCCTCATAAAACCAAGCGTTGGGGCTACTCCCTTAATTTCATGGGATATG3800.10832568401968107No Hit
CTACTGTACCTGTCTTTAATCCTGAGTGGCAAACTCCCTCTTTTCCTAAC3670.10461980535584987No Hit
CAATATGTTCTTGTGGTAAAGTACCCCAACTTCCAATTACATATCCCATG3610.10290939981869701No Hit
CATGTATACAATCTAAGCAGGCTTTTACTTTCTCGCCAACTTACAAGGCT3510.10005872392344224No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)