FastQCFastQC Report
Sat 3 Sep 2022
EGAF00002490534

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002490534
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511697
Sequences flagged as poor quality0
Sequence length35-151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN45380.8868529618113845No Hit
GTATGTAAATAATGCCTAGTTTGGAAGTAATGATTAACTATGTGTTCAGG14370.2808302569684794No Hit
GGATATTATCAATAGATGTCAACAATATGTAGGCCCTCTTACAGTTAACG10640.20793555561201257No Hit
CTCTTACAGTTAACGAAAAAAGGAGATTAAAATTGATTATGCCTGCTAGG7400.14461683379030948No Hit
ATCCTAACCATACAAAATATTTGCCCTTAGATAAAGGCATTAAACCTTAT6490.12683287179717684No Hit
GTGTAAAGGGAGCGGCAAAGCCCAGAAGCCCCACAATTCGTTGACATACT6060.11842946118503725No Hit
AGTCTAGACTCTGTGGTATTGTGAGGATTCTTGTCAACAAGAAAAACCCC5950.11627975149355967No Hit
GTTCTATCCTAACCATACAAAATATTTGCCCTTAGATAAAGGCATTAAAC5920.1156934670322476No Hit
GTCTTTGAAGTATGCCTCAAGGTCGGTCGTTGACATTGCTGAGAGTCCAA5800.11334832918699934No Hit
GTGCTGGTGAACAGACCAATTTATGCCTACAGCCTCCCAGTACAAAGATC5480.10709462826633731No Hit
GTTAATCATTACTTCCAAACTAGGCATTATTTACATACTCTGTGGAAGGC5230.10220892442207008No Hit
CCCTTTACACAATGTGGTTACCCAGCATTAATGCCTTTGTATGCATGTAT5170.10103635549944597No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)