FastQCFastQC Report
Wed 14 Sep 2022
EGAF00002495190

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002495190
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31402942
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGCTTCAATCGGGAGTACTACTCGATTGTCAACGTCAAGGAGTCGCA626110.1993794084643407No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCTCGTATGC481640.15337416475182483TruSeq Adapter, Index 10 (100% over 50bp)
CCCCACTCTCACTATTCTGGTAATTTTGCTGGTAATTGCGTGGAGGACCC332470.10587224598255793No Hit
CTGGGCGTCTGCGTCGGTAATTGAAGTTGCGGCGGTACCGACGTTGAGGT317150.10099372218055239No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)