FastQCFastQC Report
Sun 2 Apr 2023
EGAF00002495192

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002495192
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30379517
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGGGTTTTGGGGGGAAGAGGAAGACTGACGGTCCCCCCAGGAGTTCAG515220.16959453305330693No Hit
CTCGGGGCTGCCCTTTGGCTTTGGAGATGGTTTTCTCGATGGGGGCTGGG421250.13866250737297764No Hit
CTCCGGCTGCCCATTGCTCTCCCACTCCACGGCGATGTCGCTGGGATAGA369100.12149633583707076No Hit
GTCCGGGAGATCATGAGGGTGTCCTTGGGTTTTGGGGGGAAGAGGAAGAC334340.11005441594084593No Hit
GTGAAAGATGAGCTGGAGGACCGCAATAGGGGTAGGTCCCCTGTGGAAAA305480.10055459407073523No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)