FastQCFastQC Report
Sun 2 Apr 2023
EGAF00002495197

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002495197
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30934592
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN534150.17267077580981188No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT323380.10453669471380131No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)