FastQCFastQC Report
Sun 12 May 2024
EGAF00002495367

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002495367
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41964430
Total Bases5.9 Gbp
Sequences flagged as poor quality0
Sequence length35-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGC15945973.7998776582929876TruSeq Adapter, Index 1 (100% over 50bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1124000.2678458875766929No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG613090.1460975402263298No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)