FastQCFastQC Report
Thu 8 Dec 2022
EGAF00002528705

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002528705
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500267111
Sequences flagged as poor quality0
Sequence length151
%GC25

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAATAACAAAACATCCATCTCAAAAAAATCACCAACAATAACCAAAAT42217690.843902968468379No Hit
CATAATAACAAATACACTAAACTTTATAAAATACCCTCACTTTCCTACTC21844060.4366479330679006No Hit
CATAATAACAATAAATTATTCACATTTACCTTACATATACACACAAAAAA17310050.34601615056001556No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN6439890.1287290301200712No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)