FastQCFastQC Report
Thu 17 Nov 2022
EGAF00002528711

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002528711
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478276348
Sequences flagged as poor quality0
Sequence length151
%GC26

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCATAAATTACAACATCCATCTCAAAAAAATCACCAACAATAACCAAAAT35564430.7435958342644199No Hit
CCATAAATTACATACACTAAACTTTATAAAATACCCTCACTTTCCTACTC18225270.38106149459851607No Hit
CCATAAATTACTAAATTATTCACATTTACCTTACATATACACACAAAAAA14281860.2986110448430538No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN10754180.2248528501350855No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGT4957010.10364321841815184Illumina Single End PCR Primer 1 (100% over 50bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)