FastQCFastQC Report
Mon 12 Dec 2022
EGAF00002528804

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002528804
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513076260
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGCC13233200.257918774101924TruSeq Adapter, Index 12 (100% over 50bp)
CATCAGCGAACGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT12806950.2496110422259646No Hit
CATCAGCGAACTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA7721560.15049536690705587No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)