FastQCFastQC Report
Sun 18 Dec 2022
EGAF00002528810

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002528810
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443468271
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTTGAACTCCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT31339330.706687085624667No Hit
TGTTGAACTCCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA19590600.44175877466552727No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTCAACAATCTCGTATG15597060.35170633436365956TruSeq Adapter, Index 13 (97% over 39bp)
TGTTGAACTCCGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC7372240.16624052907722003No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)