FastQCFastQC Report
Tue 13 Dec 2022
EGAF00002528813

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002528813
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477626905
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATCCCCCTAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT17192950.3599661120430391No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGT12772710.2674202367222173Illumina Single End PCR Primer 1 (100% over 50bp)
GAATCCCCCTATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA11094390.2322815127007973No Hit
GAATCCCCCTAGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC6745930.14123848404226727No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)