FastQCFastQC Report
Tue 13 Dec 2022
EGAF00002528822

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002528822
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517879272
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCCCCTGTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT29454040.5687433653455819No Hit
CCTGCCCCTGTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA20166650.38940832526697455No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGCC9954900.1922243375672313TruSeq Adapter, Index 6 (100% over 50bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)