FastQCFastQC Report
Tue 27 Dec 2022
EGAF00002528824

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002528824
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440466035
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTCAGAAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT18847670.4279029142394601No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCTCGTATGCC17696190.40176060340271186TruSeq Adapter, Index 8 (100% over 50bp)
AGAACTCAGAATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA12856480.29188357281623317No Hit
AGAACTCAGAAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5851040.13283748427957676No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)