FastQCFastQC Report
Wed 16 Nov 2022
EGAF00002528826

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002528826
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences525636593
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAAGTCATGCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT38927230.74057305976032No Hit
TAAAGTCATGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA27943850.5316191903709413No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGCC20930220.398188031022414TruSeq Adapter, Index 7 (100% over 50bp)
TAAAGTCATGCGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5535820.10531648811596343No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)