FastQCFastQC Report
Mon 5 Dec 2022
EGAF00002528828

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002528828
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503871008
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGTGGATATCTCGTATG33992600.6746290113996795TruSeq Adapter, Index 7 (97% over 35bp)
TGCATCAGCGCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT29020020.5759414520630646No Hit
TGCATCAGCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA18644720.37002962472490575No Hit
TGCATCAGCGCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC7739740.15360558311781256No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)