FastQCFastQC Report
Fri 10 May 2024
EGAF00002528872

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002528872
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences376692299
Total Bases56.8 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGCC21533790.5716546384719163TruSeq Adapter, Index 3 (100% over 50bp)
GTTGACGAATAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT9727380.2582314537839809No Hit
GTTGACGAATATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA5781110.15347035273476614No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC4532590.12032605954601688No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)