FastQCFastQC Report
Wed 16 Nov 2022
EGAF00002528874

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002528874
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504357267
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATGCC48573910.9630853598863681TruSeq Adapter, Index 5 (100% over 50bp)
AGCCATATGAGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT27831630.5518237134868129No Hit
AGCCATATGAGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA19080350.37831020287450323No Hit
AGCCATATGAGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC6080450.12055838981298946No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)