FastQCFastQC Report
Wed 15 May 2024
EGAF00002529253

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002529253
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61157176
Total Bases6.1 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGACGAATAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT2400020.3924347324343426No Hit
GTTGACGAATATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA626960.10251617896810669No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)