FastQCFastQC Report
Tue 5 Sep 2023
EGAF00002529569

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002529569
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36603112
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT495770.13544476764707875No Hit
CTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC421490.11515141116962951No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT418890.11444108905275595No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)