FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002531268

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002531268
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31333352
Sequences flagged as poor quality0
Sequence length16
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG6635112.1175870363311273No Hit
AAAAAAAAAAAAAAAA5410281.726684077720124No Hit
CAAAAAAAAAAAAAAA2126900.6787974679504446No Hit
CCAAAAAAAAAAAAAA1077390.3438476674950066No Hit
TAAAAAAAAAAAAAAA466460.14887012407737288No Hit
ACAAAAAAAAAAAAAA435960.13913608732318203No Hit
TCAAAAAAAAAAAAAA359120.1146126976775418No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)