FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002531276

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002531276
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18984010
Sequences flagged as poor quality0
Sequence length16
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG3467421.8264950345053548No Hit
AAAAAAAAAAAAAAAA3294801.7355658788633173No Hit
CAAAAAAAAAAAAAAA1322140.6964492749424384No Hit
CCAAAAAAAAAAAAAA619220.32617976918469804No Hit
TAAAAAAAAAAAAAAA314020.16541289221824051No Hit
ACAAAAAAAAAAAAAA291540.15357134767628125No Hit
TCAAAAAAAAAAAAAA257840.1358195660453192No Hit
CTAAAAAAAAAAAAAA192620.10146433761886978No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)