FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002531290

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002531290
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4532069
Sequences flagged as poor quality0
Sequence length16
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAA2338535.159961156813808No Hit
GGGGGGGGGGGGGGGG1545933.411091049143338No Hit
CAAAAAAAAAAAAAAA1131182.4959461120296274No Hit
CCAAAAAAAAAAAAAA588511.298545984185148No Hit
TCTTTGAGAGTTGTTG260270.5742851664438472No Hit
TAAAAAAAAAAAAAAA210660.4648208136283891No Hit
TCAAAAAAAAAAAAAA198140.4371954619402308No Hit
ACAAAAAAAAAAAAAA182310.4022666027370722No Hit
CTAAAAAAAAAAAAAA149520.3299155418860569No Hit
TCCAAAAAAAAAAAAA140480.30996880232847296No Hit
ACCAAAAAAAAAAAAA113210.24979760899492043No Hit
CCCAAAAAAAAAAAAA101770.22455527486452656No Hit
GCAAAAAAAAAAAAAA88890.19613558399044673No Hit
NNNNNNNNNNNNNNNN88100.19439245077689682No Hit
ATAAAAAAAAAAAAAA78590.17340865728213758No Hit
GAAAAAAAAAAAAAAA72370.15968424134760525No Hit
CTCAAAAAAAAAAAAA65800.14518755120453813No Hit
ATCAAAAAAAAAAAAA56560.12479951209922002No Hit
AACAAAAAAAAAAAAA55250.1219090000615613No Hit
TTCAAAAAAAAAAAAA51800.11429658286314705No Hit
TACAAAAAAAAAAAAA48510.10703720530292014No Hit
TTAAAAAAAAAAAAAA47290.10434527806174178No Hit
GCCAAAAAAAAAAAAA46570.10275659968989881No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)