FastQCFastQC Report
Sat 10 Sep 2022
EGAF00002531291

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002531291
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3549320
Sequences flagged as poor quality0
Sequence length63
%GC35

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1593064.488352698545073No Hit
TCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTAAA899052.5330204095432367No Hit
TCTTTTAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTAAA206040.5805055616287064No Hit
TCTTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTAA184010.5184373344753361No Hit
TTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTA169880.4786268919116901No Hit
TCTTTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTA149360.42081300080015327No Hit
TCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTT141490.3986397394430482No Hit
TCTTTGTGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTAAA134250.37824146597094654No Hit
GATTCTTATTGGATTTCTGATATTTCCTATTGTTATGGGCTATTACATCTCTAAGGAATTGGT130740.3683522477544995No Hit
TTTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTAAA118340.33341597827189434No Hit
TCTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTA107340.3024241263115188No Hit
CTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTA102450.28864683939458824No Hit
TCTTTAAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTAAA101190.28509686362458164No Hit
TCTTTTTGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTAAA91090.2566407086427823No Hit
TCTTATTGGATTTCTGATATTTCCTATTGTTATGGGCTATTACATCTCTAAGGAATTGGTGAA89270.2515129658638838No Hit
TTTCAGTCTCGACGGGCTAGCACACATCTGGTTGACTAGGCGCATAGTCGCCATTCACAGATT83840.2362142607598075No Hit
ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT83440.2350872843248848No Hit
TTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTAA81240.22888891393280963No Hit
CCTTATACAGAATTATCAATCAAGCTCCCCGAGGAGCGGACTTGTAAGGACCGCCGCTTTCGC80310.22626869372161426No Hit
TCTTTGGGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTAAA79220.22319768293644981No Hit
TCTTTATGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTAAA71480.20139068892069464No Hit
TATCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTA62220.1753011844522331No Hit
TCTTTGAAAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTAAA61100.17214565043444943No Hit
TCTTTGATAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTAAA60610.17076510430166905No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT58390.16451038508784782No Hit
TTTTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTAA54850.1545366436387815No Hit
TCTTTTGGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTAAA52130.14687320388130684No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT50200.1414355425828046No Hit
TATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT49220.13867445031724387No Hit
CTTCTTCAACAAATTCAAACTCTAACTGCTTTGGTTTTTTACCAATGTAAGTTCTTAATTCCA46670.13148997554461136No Hit
TCTTATACAGAATTATCAATCAAGCTCCCCGAGGAGCGGACTTGTAAGGACCGCCGCTTTCGC43360.12216424554562565No Hit
TCTTTTTAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTAA42040.11844522331038058No Hit
ACTAGTTTACTGCGTCACGCTGAGGGACTCATCCTGGGCTACAATCCTATTGCCGAGATAGTA40930.11531786370346997No Hit
TCTTCTTCAACAAATTCAAACTCTAACTGCTTTGGTTTTTTACCAATGTAAGTTCTTAATTCC40440.1139373175706896No Hit
GATTCTTGTTGGATTTCTGATATTTCCTATTGTTATGGGCTATTACATCTCTAAGGAATTGGT40150.11312025965537062No Hit
TCTTTGCGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTAAA39300.11072543473115977No Hit
GGTTTTTTGCGACGTTGGTGTTGTATTCTATAGCTCCATTATGGCCGTTATATGGAATCATTG39110.11019012092457146No Hit
ATTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTA37640.10604848252623038No Hit
CTTCTTTAACAAATTCAAACTCTAACTGCTTTGGTTTTTTACCAATGTAAGTTCTTAATTCCA37090.1044988899282116No Hit
TCTTTCAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTAAA36190.10196319294963542No Hit
TCTTTTGGGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTAA36170.10190684412788929No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)