FastQCFastQC Report
Sat 1 Apr 2023
EGAF00002531293

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002531293
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29284958
Sequences flagged as poor quality0
Sequence length63
%GC35

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4935781.6854318179319225No Hit
TCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTAAA1394750.476268396901918No Hit
TCTTTTAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTAAA401740.13718305486386562No Hit
TCTTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTAA360140.12297780997329755No Hit
TTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTA332790.11363854440221495No Hit
TCTTTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTA307140.10487978162714114No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)