FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002531294

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002531294
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29284958
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG9849773.3634229559079443No Hit
AAAAAAAAAAAAAAAA2404720.8211451080107405No Hit
CAAAAAAAAAAAAAAA1074680.3669733793027806No Hit
GCAAAAGGGGACTACT600450.2050370022726343No Hit
NNNNNNNNNNNNNNNN565030.19294205578167467No Hit
CCAAAAAAAAAAAAAA454820.15530840098865772No Hit
AGTGAACGGGACTACT406130.13868211796650007No Hit
ACCGGGGAGGACTACT309950.10583931860172037No Hit
GGTCGGTAGGGTTATG303640.10368462881182894No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)