FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002531314

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002531314
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45297245
Sequences flagged as poor quality0
Sequence length16
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG13453912.9701386916577377No Hit
AAAAAAAAAAAAAAAA5632441.243439860415352No Hit
CAAAAAAAAAAAAAAA2279910.5033220011504012No Hit
CCAAAAAAAAAAAAAA1143750.25249879987182444No Hit
AGTTGAGCAGACTGAA654710.14453638405602814No Hit
TTCTTTGACGCTATAG653740.14432224299733903No Hit
ATAAAATATCCCTAGA511890.11300687271378204No Hit
TAAAAAAAAAAAAAAA476820.10526468000426957No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)