FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002531322

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002531322
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51742535
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG16151833.121576861280569No Hit
AAAAAAAAAAAAAAAA2580240.49866903505984006No Hit
CAAAAAAAAAAAAAAA1094280.2114855795140304No Hit
TTGTTCCTTTTGGGGG594640.11492285795429234No Hit
CCAAAAAAAAAAAAAA563940.1089896349299469No Hit
GCAACTTTCAGATAGC527480.10194320784631059No Hit
GGAGGAAATAGAGACA517720.10005694541251216No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)