FastQCFastQC Report
Sun 2 Apr 2023
EGAF00002531325

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002531325
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45307876
Sequences flagged as poor quality0
Sequence length63
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11946682.636777764642951No Hit
TCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTAAA1118220.24680477186791983No Hit
ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT555750.12266079301532476No Hit
TCTTTTTTTCATAATCAGGTTAGTGTAAGAAATTGCCATTTGAAACAATCCATTTTGTAACTG460180.10156733014807402No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)