FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002538356

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538356
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12758288
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAGTGCT375642229.44299423245501No Hit
GCTACCTG374926429.38688952624365No Hit
TGCTGTAA313097324.540698563945256No Hit
CTGCAAGC195426915.317642931402709No Hit
GCTACCTA209100.1638934628219711No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)