FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002538359

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538359
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12394113
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTAGCGA380844330.727838289032867No Hit
AGAGTGTG334328826.97480650692793No Hit
CTGTAACT293934323.715638222759466No Hit
GACCCTAC210604416.992293034604415No Hit
GCCCCTAC561640.4531506207826248No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)