FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002538362

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538362
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12403477
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTAGCGA381041030.720498776270556No Hit
AGAGTGTG332953126.843529439366076No Hit
CTGTAACT294289123.726338993493517No Hit
GACCCTAC210245816.950553461743027No Hit
GCCCCTAC635030.5119774076252973No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)