FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002538365

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538365
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12650456
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTAGCGA388855630.73846507983586No Hit
AGAGTGTG339699526.85274744246373No Hit
CTGTAACT300565523.759262116717373No Hit
GACCCTAC214286216.93900994557034No Hit
GCCCCTAC639170.505254514145577No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)