FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002538377

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538377
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences73513477
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCCCGT2099666528.561654076027448No Hit
TCAGGGTG1965826026.741028723209485No Hit
CATATAAC1663303122.625825465989045No Hit
AGCTATCA1506249520.489433522509078No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)