FastQCFastQC Report
Mon 12 Sep 2022
EGAF00002538380

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538380
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38023940
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGAAAT1032312827.149022431657528No Hit
TAGTGCGG1012302526.62276713039206No Hit
GGTATGCA883364223.23179028790809No Hit
ACACCTTC735784219.350551257970636No Hit
ACCCCTTC1320160.34719179548463414No Hit
TTGTGCGG1309890.3444908654915824No Hit
CTCGATAT632600.1663688718212789No Hit
CTCGCAAT545540.1434727700496056No Hit
TAGTGGGG544830.1432860455807578No Hit
GGGATGCA474190.12470827589145154No Hit
TAGGGCGG442760.11644243074231655No Hit
CCACCTTC440810.11592959593350925No Hit
CTCGAATT410000.10782680595435402No Hit
CGCGAAAT395250.10394767086209372No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)