FastQCFastQC Report
Mon 12 Sep 2022
EGAF00002538383

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538383
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38100670
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGAAAT1038863127.26626854593371No Hit
TAGTGCGG1019968926.770366505365917No Hit
GGTATGCA887580623.295669078785227No Hit
ACACCTTC741018919.44897294457027No Hit
ACCCCTTC1194560.3135272949268346No Hit
TTGTGCGG1112600.29201586218825026No Hit
CTCGATAT540670.14190564102940972No Hit
TAGTGGGG466220.12236530223746721No Hit
CTCGCAAT463960.12177213681544184No Hit
CCACCTTC433820.11386151477126255No Hit
GGGATGCA412910.10837342230464714No Hit
TAGGGCGG387410.10168062661365272No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)