FastQCFastQC Report
Mon 12 Sep 2022
EGAF00002538386

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538386
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38149979
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGAAAT1044354627.37497181846417No Hit
TAGTGCGG1022928026.813330618085008No Hit
GGTATGCA891025823.35586606744921No Hit
ACACCTTC745764919.5482388076806No Hit
ACCCCTTC1119250.2933815507473805No Hit
TTGTGCGG901380.23627273818420713No Hit
CTCGATAT467420.12252169260696054No Hit
CTCGCAAT433230.11355969553744709No Hit
TAGTGGGG429600.11260818780529341No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)