FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002538387

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538387
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12576249
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTAGCGA386484930.73133332522281No Hit
AGAGTGTG336847026.784377440363976No Hit
CTGTAACT298466923.73258512931797No Hit
GACCCTAC212702616.913039810200956No Hit
GCCCCTAC680360.5409880163791286No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)