FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002538390

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538390
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11007259
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGCGGG349396431.74236201764672No Hit
ACCATAAC325938629.611241090992774No Hit
CAACGCCT228220620.73364495193581No Hit
GTGTATTA182166216.54964237690782No Hit
CCCATAAC128410.11665937905158767No Hit
TGTGCGGA127700.11601435016655827No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)