FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002538396

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538396
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11225766
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGCGGG355848231.699235490923293No Hit
ACCATAAC332153829.588519839091603No Hit
CAACGCCT232969620.75311386323214No Hit
GTGTATTA185287216.505528442335248No Hit
CCCATAAC154550.1376743466770998No Hit
TGTGCGGA127810.11385414589970964No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)