FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002538399

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538399
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11167309
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGCGGG353435031.649074992014636No Hit
ACCATAAC329504429.506159451663784No Hit
CAACGCCT231580020.737314602828665No Hit
GTGTATTA184779516.546466118202694No Hit
CCCATAAC175870.1574864633905984No Hit
TGTGCGGA129470.11593661463115242No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)