FastQCFastQC Report
Mon 12 Sep 2022
EGAF00002538409

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538409
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34730270
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGAAAT947586827.284176022818134No Hit
TAGTGCGG925988826.662297759274544No Hit
GGTATGCA802380723.103209390540297No Hit
ACACCTTC671877819.345596794957252No Hit
ACCCCTTC1214650.34973813909307355No Hit
TTGTGCGG1047950.30173966398763963No Hit
CTCGATAT517220.1489248427956362No Hit
CTCGCAAT512400.14753700446325352No Hit
TAGTGGGG488850.14075617609652905No Hit
CCACCTTC459700.13236292145151765No Hit
GGGATGCA408460.1176092210051923No Hit
TAGGGCGG405550.11677133520701106No Hit
GGTATGCC374040.10769855805900731No Hit
CGCGAAAT366390.10549586858956178No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)