FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002538412

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538412
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14470254
Sequences flagged as poor quality0
Sequence length8
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGATGTG479958533.16862993559063No Hit
CACGGTGC432001629.854458670870603No Hit
TTTCCACT277229119.158551052386503No Hit
AGATACAA196545213.582705597289447No Hit
CCCGGTGC1378810.952858187561877No Hit
TTTCCCCT924540.6389245136954749No Hit
GCGATGGG320070.22119169435450128No Hit
GCGAGGTG267790.18506240457147471No Hit
AGCTACAA214040.1479172376656277No Hit
GCGTTGTG203040.14031543606629157No Hit
GCGGTGTG173200.11969382154591067No Hit
CGCGGTGC163090.1127070748032481No Hit
CACGGTGG151530.10471827239521848No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)