FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002538415

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538415
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14517413
Sequences flagged as poor quality0
Sequence length8
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGATGTG484304633.360255026153766No Hit
CACGGTGC433963229.892598633103567No Hit
TTTCCACT279872519.2784003596233No Hit
AGATACAA198595613.67982022692335No Hit
CCCGGTGC1243450.8565231284664836No Hit
TTTCCCCT848590.5845325196713766No Hit
GCGATGGG271430.18696857353303925No Hit
GCGAGGTG236020.16257717542374803No Hit
AGCTACAA196760.13553378966348895No Hit
GCGTTGTG183670.12651703165019829No Hit
GCGGTGTG145900.10049999955226183No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)