FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002538418

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538418
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13407344
Sequences flagged as poor quality0
Sequence length8
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGATGTG443461333.075999243399735No Hit
CACGGTGC396738129.591103204333386No Hit
TTTCCACT258206319.25857201844004No Hit
AGATACAA182876713.640039369467956No Hit
CCCGGTGC1341721.0007351194986867No Hit
TTTCCCCT862660.6434234849199065No Hit
GCGATGGG305970.22821074778121603No Hit
GCGAGGTG261640.19514677925769638No Hit
AGCTACAA204820.15276702082082774No Hit
GCGTTGTG191730.14300371497889516No Hit
GCGGTGTG166940.124513848529582No Hit
CACGGTGG156470.11670469557579785No Hit
CGCGGTGC152660.11386296942929189No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)