FastQCFastQC Report
Sat 10 Sep 2022
EGAF00002538424

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538424
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16007896
Sequences flagged as poor quality0
Sequence length8
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGATGTG522410232.634532358281184No Hit
CACGGTGC464759529.033140894968334No Hit
TTTCCACT308997019.302786574825323No Hit
AGATACAA221132613.813970305654161No Hit
CCCGGTGC2265581.4152890548514308No Hit
TTTCCCCT968770.6051825923906552No Hit
GCGAGGTG664510.4151138912946461No Hit
GCGATGGG354460.22142822517087815No Hit
CTCGGTGC278580.17402661786408408No Hit
CGCGGTGC264000.16491861266465No Hit
GCGTTGTG256780.16040833848495767No Hit
GGGATGTG247480.1545987055388166No Hit
CACGGTGG175710.10976458117918807No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)