FastQCFastQC Report
Sun 11 Sep 2022
EGAF00002538439

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538439
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21317372
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGCGTG637739629.916426846611298No Hit
CGACTTGA587458227.55772146773064No Hit
TACAGACT482289522.624247491670175No Hit
GCGTACAC377084117.689051915029676No Hit
CGCCTTGA624110.2927706098106277No Hit
TACAGCCT575550.26999106644102283No Hit
GCGTACCC346160.16238399367426717No Hit
CGACTTGC222130.10420139968472662No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)