FastQCFastQC Report
Sat 10 Sep 2022
EGAF00002538446

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002538446
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16022493
Sequences flagged as poor quality0
Sequence length8
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGATGTG526231232.843278508531725No Hit
CACGGTGC466398229.10896575208365No Hit
TTTCCACT311301619.429036417740985No Hit
AGATACAA222341213.876816797485883No Hit
CCCGGTGC2157351.3464508925046808No Hit
TTTCCCCT898240.5606118848046929No Hit
GCGAGGTG594770.3712093991865061No Hit
GCGATGGG313120.1954252687144254No Hit
CTCGGTGC242340.15124987104066764No Hit
CGCGGTGC224030.13982218622283063No Hit
GGGATGTG218810.13656426624745602No Hit
GCGTTGTG217700.1358714901607384No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)